Interpolation and Extrapolation with Beta Diversity for Three Dimensions of Biodiversity

As a sequel to 'iNEXT', the 'iNEXT.beta3D' package provides functions to compute standardized taxonomic, phylogenetic, and functional diversity (3D) estimates with a common sample size (for alpha and gamma diversity) or sample coverage (for alpha, beta, gamma diversity as well as dissimilarity or turnover indices). Hill numbers and their generalizations are used to quantify 3D and to make multiplicative decomposition (gamma = alpha x beta). The package also features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of beta diversity across datasets. See Chao et al. (2023) for more details.


Reference manual

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install.packages("iNEXT.beta3D")

1.0.2 by Anne Chao, 3 years ago


https://sites.google.com/view/chao-lab-website/software/inext-beta3d


Report a bug at https://github.com/AnneChao/iNEXT.beta3D/issues


Browse source code at https://github.com/cran/iNEXT.beta3D


Authors: Anne Chao [aut, cre] , KaiHsiang Hu [ctb]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports stats, magrittr, ggplot2, abind, iNEXT.3D, future.apply, tibble, dplyr, tidytree, tidyr, phyclust, ape

Suggests testthat, knitr, rmarkdown, ggthemes


Suggested by spacc.


See at CRAN